Commit by goncearenco :: r728316 strigi-chemical/trunk/playground/utils/strigi-chemical/src/inchi/inchilineanalyzer.cpp:

late commit of InChI recognition bug in InChI line analyzer

Commit by goncearenco :: r728315 strigi-chemical/trunk/playground/utils/strigi-chemical/ (4 files in 4 dirs):

Replace FindOpenBabel2.cmake with Carsten's version from kdeedu, make Openbabel optional and openbabel-helper optional, temp. disable mime-helper because it breaks compilation

Commit by goncearenco :: r708330 strigi/trunk/kdesupport/strigi/src/streamanalyzer/streamanalyzer.cpp:

Fixed strange bug with reset() in main analysis cycle

Commit by goncearenco :: r708330 /trunk/kdesupport/strigi/src/streamanalyzer/streamanalyzer.cpp:

Fixed strange bug with reset() in main analysis cycle

Commit by goncearenco :: r707785 strigi/trunk/kdesupport/strigi/src/streamanalyzer/ (4 files in 4 dirs):

there should not be VERSION and SOVERSION target properties for MODULE library type. Otherwize we only get broken symlinks instead of .so on linux, cmake 2.4.7-1

Commit by goncearenco :: r707785 /trunk/kdesupport/strigi/src/streamanalyzer/ (4 files in 4 dirs):

there should not be VERSION and SOVERSION target properties for MODULE library type. Otherwize we only get broken symlinks instead of .so on linux, cmake 2.4.7-1

Commit by goncearenco :: r704575 strigi/trunk/kdesupport/strigi/testdata/data/drugs.sdf:

added SD testfile

Commit by goncearenco :: r704575 /trunk/kdesupport/strigi/testdata/data/drugs.sdf:

added SD testfile

Commit by goncearenco :: r703053 strigi-chemical/trunk/playground/utils/strigi-chemical/test/ (7 files):

updated testsuite.
new SDF, MOL, PNG tests
CML, ALC updated
as well as the helper to access test file repository

Commit by goncearenco :: r703051 strigi-chemical/trunk/playground/utils/strigi-chemical/src/png-chemical/ (4 files):

PNG chemical analyzer can process chemical structural information embedded into PNG images as chunks. These chunks are recognized (Molfile, InChI, CML) and substreams passed to indexer children for analysis, making use of the powerful Jstreams and Strigi architecture

This analyzer does not extract any image-related information, this task remains to pngendstreamanalyzer in Strigi.

Commit by goncearenco :: r703048 strigi-chemical/trunk/playground/utils/strigi-chemical/src/cml/CMakeLists.txt:

Fixed openbabel helper path

Commit by goncearenco :: r703047 strigi-chemical/trunk/playground/utils/strigi-chemical/src/mdl-sdfile/:

MDL SD file endAnalyzer has been moved to Strigi main branch

Commit by goncearenco :: r703046 strigi-chemical/trunk/playground/utils/strigi-chemical/src/mdl-molfile/ (3 files):

Completely reworked MOL parser. It parses format according to MDL documentation and does not add any overhead due to correct signature recognition.

Commit by goncearenco :: r703028 strigi-chemical/trunk/playground/utils/strigi-chemical/ (4 files in 3 dirs):

Strigi-chemical is the name of the project
kfile-chemical is obsolete

Commit by goncearenco :: r703027 strigi-chemical/trunk/playground/utils/strigi-chemical/src/inchi/ (5 files):

greatly improved InChI mining
this is a greedy analyzer that reads everything to find InChI chemical identifiers
it can even fix spaces in InChI's. Number of entries and version are also extracted
InChI-X is removed because there is no much sense in another greedy analyzer doing same work, I have no samples of inchi-x and this shlould be implemented as a SAX parser based on InChI namespace primary filter

Commit by goncearenco :: r703025 strigi-chemical/trunk/playground/utils/strigi-chemical/src/inchi-generator/ (3 files):

Inchi-generator is a sample user of OpenBabel Helper facility.
Should become obsolete when other analyzers will make use of OB helper

Commit by goncearenco :: r703023 strigi-chemical/trunk/playground/utils/strigi-chemical/src/openbabel-helper/ (4 files):

Added OpenBabel Helper available as a Singleton threadsafe facility

Commit by goncearenco :: r702648 strigi/trunk/kdesupport/strigi/src/streamanalyzer/fieldproperties/strigi_chemistry.fieldproperties:

Updated Chemistry fieldproperties.
Added new identifiers, descriptors and statistical counters.
Aggregated PubChem properties and Chemspot properties.
TODO: Need a review for consistence before migration of this chemical ontology to XESAM standards.
Special attention to extra indexing control flags that should be supported.

Commit by goncearenco :: r702648 /trunk/kdesupport/strigi/src/streamanalyzer/fieldproperties/strigi_chemistry.fieldproperties:

Updated Chemistry fieldproperties.
Added new identifiers, descriptors and statistical counters.
Aggregated PubChem properties and Chemspot properties.
TODO: Need a review for consistence before migration of this chemical ontology to XESAM standards.
Special attention to extra indexing control flags that should be supported.

Commit by goncearenco :: r702646 /trunk/kdesupport/strigi/src/streamanalyzer/ (5 files in 3 dirs):

new SD file endAnalyzer makes use of SD substeam provider.
it extracts the number of entries into ontology and performs indexChild() analysis of each entry
although the factory is added to the list of generic Strigi endAnalyzer factories, there should be no overhead due to careful control over stream contents. It fast and clearly destinguishes between any stream and SD stream and more: between MOL and SD.

TODO: move both substream provider and endAnalyzer to Strigi-chemical, once API allows.