http://cia.vc/stats/project/cdk/cdk14498481931 github 1 http://www.github.com cdk master 1337501530 Egon Willighagen 19bb74a Return a default array instead of null, fixing NullPointerExceptions caused otherwise when instantiating via e.g. IAtom(Elements.CARBON) - http://git.io/p2RBEg https://github.com/cdk/cdk/commit/19bb74aa18f46cdf7deb212c8d0d7ad156fdc204 src/main/org/openscience/cdk/config/NaturalElement.java github 1 http://www.github.com cdk master 1337494845 Egon Willighagen 53aa18c Updated to not use IMolecule (+77 more commits...) - http://git.io/APrNxQ https://github.com/cdk/cdk/commit/53aa18c565feb244cede231e5cc7ac6096e420f5 src/test/org/openscience/cdk/AbstractChemObjectBuilderTest.java github 1 http://www.github.com cdk master 1337494197 Egon Willighagen 9493eef Added reading of the single electron counts for the CDK atom types (+5 more commits...) - http://git.io/QZpnnw https://github.com/cdk/cdk/commit/9493eef044058e1845c230d3a61b5db9b3a4da2e src/main/org/openscience/cdk/CDKConstants.java src/main/org/openscience/cdk/config/atomtypes/OWLAtomTypeHandler.java src/test/org/openscience/cdk/config/atomtypes/OWLAtomTypeReaderTest.java github 1 http://www.github.com cdk cdk-1.4.x 1337493966 Egon Willighagen 6c7595d Open for more bug fixing - http://git.io/prjuog https://github.com/cdk/cdk/commit/6c7595d12c1d5bc9d757190b8ca1558c6e82ceaa build.props github 1 http://www.github.com cdk cdk-1.4.x 1337426162 Egon Willighagen 41ff223 Bumped version, preparing for the 1.4.10 release - http://git.io/-kWKpw https://github.com/cdk/cdk/commit/41ff223935c39fc02880d6f18eae969f3fbaf67b build.props github 1 http://www.github.com cdk 406-14x-kevinsPatch 1337421658 Egon Willighagen 5677a2c Added the tool to the smiles module, and the tests to the module's test suite - http://git.io/gI3MUA https://github.com/cdk/cdk/commit/5677a2c8d63dea1534597d2ac221c27680ed98d5 src/main/org/openscience/cdk/smiles/FixBondOrdersTool.java src/test/org/openscience/cdk/modulesuites/MsmilesTests.java github 1 http://www.github.com cdk 406-14x-kevinsPatch 1337420228 Kevin Lawson 36d6682 Class to fix bond orders for aromatic rings - http://git.io/N0uNFg https://github.com/cdk/cdk/commit/36d6682729319dd462880e698a928f03be08cb4e src/main/org/openscience/cdk/smiles/FixBondOrdersTool.java src/test/org/openscience/cdk/smiles/FixBondOrdersToolTest.java github 1 http://www.github.com cdk cdk-1.4.x 1337419100 Egon Willighagen d71024e Any JUnit version is fine (+75 more commits...) - http://git.io/FCiB8A https://github.com/cdk/cdk/commit/d71024e9212fbc06e91de7278434c64db475f5ec src/META-INF/test-renderextra.devellibdepends github 1 http://www.github.com cdk cdk-1.4.x 1337417437 Egon Willighagen cf897ab Added reading of the single electron counts for the CDK atom types - http://git.io/w2b0qQ https://github.com/cdk/cdk/commit/cf897ab575e4281a640b1818d297be5a19479f59 src/main/org/openscience/cdk/CDKConstants.java src/main/org/openscience/cdk/config/atomtypes/OWLAtomTypeHandler.java src/test/org/openscience/cdk/config/atomtypes/OWLAtomTypeReaderTest.java github 1 http://www.github.com cdk master 1337376982 Egon Willighagen 2026a25 It turns out that Java creates an inner class for switch blocks, for which we do not require testing; therefore, this additional excemption - http://git.io/Nkgvyg https://github.com/cdk/cdk/commit/2026a25382884ae9f735c5d73a293b5e09f93bd4 src/test/org/openscience/cdk/coverage/CoverageTest.java github 1 http://www.github.com cdk master 1337376980 Egon Willighagen 7c6506c Set the electron counts when a bond order is set - http://git.io/6gkZxw https://github.com/cdk/cdk/commit/7c6506c4a62666d410780def8c615bfe6b7843f4 src/main/org/openscience/cdk/Bond.java src/main/org/openscience/cdk/silent/Bond.java github 1 http://www.github.com cdk master 1337376978 Egon Willighagen 1faf986 Added a unit test that sets electron counts when a bond order is set - http://git.io/1iQ9aA https://github.com/cdk/cdk/commit/1faf98686b2132e079cec4fa82c5ddd7dde2787b src/test/org/openscience/cdk/interfaces/AbstractBondTest.java github 1 http://www.github.com cdk cdk-1.4.x 1337376871 Egon Willighagen 403ac57 Two more missing test classes, and missing annotation in ArrowElement - http://git.io/-N7Ueg https://github.com/cdk/cdk/commit/403ac5769bf1ba23b460a6607fc0be7f8374cd2f src/main/org/openscience/cdk/renderer/elements/ArrowElement.java src/main/org/openscience/cdk/renderer/elements/ElementGroup.java src/main/org/openscience/cdk/renderer/elements/TextGroupElement.java src/test/org/openscience/cdk/modulesuites/MrenderbasicTests.java src/test/org/openscience/cdk/renderer/elements/ElementGroupTest.java src/test/org/openscience/cdk/renderer/elements/TextGroupElementTest.java github 1 http://www.github.com cdk cdk-1.4.x 1337376869 Egon Willighagen b245c6f Added testing in the abstract test class for general pattern that getParameters() should return a non-null List - http://git.io/pNltHg https://github.com/cdk/cdk/commit/b245c6f726c5925a821832b8b882b6b85ad40918 src/main/org/openscience/cdk/renderer/generators/BasicBondGenerator.java src/main/org/openscience/cdk/renderer/generators/BasicGenerator.java src/main/org/openscience/cdk/renderer/generators/BasicSceneGenerator.java src/main/org/openscience/cdk/renderer/generators/RingGenerator.java src/test/org/openscience/cdk/modulesuites/MrenderbasicTests.java src/test/org/openscience/cdk/renderer/generators/AbstractGeneratorTest.java src/test/org/openscience/cdk/renderer/generators/BasicAtomGeneratorTest.java src/test/org/openscience/cdk/renderer/generators/BasicBondGeneratorTest.java src/test/org/openscience/cdk/renderer/generators/BasicGeneratorTest.java src/test/org/openscience/cdk/renderer/generators/BasicSceneGeneratorTest.java src/test/org/openscience/cdk/renderer/generators/RingGeneratorTest.java github 1 http://www.github.com cdk cdk-1.4.x 1337376620 Rajarshi Guha 84b2e87 Merge branch 'fix' into cdk-1.4.x - http://git.io/w-35kw https://github.com/cdk/cdk/commit/84b2e8790c241c835da1d0f229abf9c562675591 src/main/org/openscience/cdk/DefaultChemObjectBuilder.java src/main/org/openscience/cdk/silent/SilentChemObjectBuilder.java src/test/org/openscience/cdk/AbstractChemObjectBuilderTest.java github 1 http://www.github.com cdk cdk-1.4.x 1337092251 Egon Willighagen 3d0b0e5 Also the last parameter must be an IAtom - http://git.io/h_76Lg https://github.com/cdk/cdk/commit/3d0b0e5f329e9256638ce18e4b5024e2d348474a src/main/org/openscience/cdk/DefaultChemObjectBuilder.java src/main/org/openscience/cdk/silent/SilentChemObjectBuilder.java github 1 http://www.github.com cdk cdk-1.4.x 1337092217 Egon Willighagen 2a2aecc Fixes the code to actually test the second parameter, instead of the first one twice (fixes #3526870) - http://git.io/Tt-GBQ https://github.com/cdk/cdk/commit/2a2aecc077add716309591e2fae9832dfcfc64cf src/main/org/openscience/cdk/DefaultChemObjectBuilder.java src/main/org/openscience/cdk/silent/SilentChemObjectBuilder.java github 1 http://www.github.com cdk cdk-1.4.x 1337091894 Egon Willighagen 4205ab5 Unit test: passing an incorrect second new Bond(IAtom, IAtom) should throw an IllegalArgumentException - http://git.io/IV2Tfg https://github.com/cdk/cdk/commit/4205ab573fc1bc5f2b28199660c02b9cda9a6f46 src/test/org/openscience/cdk/AbstractChemObjectBuilderTest.java github 1 http://www.github.com cdk cdk-1.4.x 1337376319 danielszisz 174493c Patch for @cdk.bug 3523247 - http://git.io/zLQEug https://github.com/cdk/cdk/commit/174493c4728c1a39c965cae828855c6210d502fa src/main/org/openscience/cdk/modeling/forcefield/data/mmff94.prm github 1 http://www.github.com cdk 401-14x-klasWork 1336684712 Egon Willighagen 67b5711 Fixed up the name to make it work here (+12 more commits...) - http://git.io/pU6J_g https://github.com/cdk/cdk/commit/67b5711b47811ed0b879c26e9ee9ba8933a5c3e5 src/main/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java src/test/org/openscience/cdk/tools/ATASaturationCheckerTest.java