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for cia@cia.vc; Fri, 12 Mar 2010 10:47:10 +0000noreply@sourceforge.net<E1Nq2Oc-0008KF-AY@sfp-svn-3.v30.ch3.sourceforge.com>Fri, 12 Mar 2010 10:47:10 +0000cdk15486shk3Wrong order of types 16http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15486jchempaint/trunk/src/main/org/openscience/jchempaint/io/JCPSaveFileFilter.java1268390840Python Subversion client for CIA1.20from sfp-svn-3.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Fri, 12 Mar 2010 10:28:22 +0000noreply@sourceforge.net<E1Nq26Q-000823-PR@sfp-svn-3.v30.ch3.sourceforge.com>Fri, 12 Mar 2010 10:28:22 +0000cdk15485shk3Added rxn to saveable files 14http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15485jchempaint/trunk/src/main/org/openscience/jchempaint/io/JCPSaveFileFilter.java1268389713Python Subversion client for CIA1.20from sfp-svn-6.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Fri, 12 Mar 2010 10:00:22 +0000noreply@sourceforge.net<E1Nq1fK-0007nq-7U@sfp-svn-6.v30.ch3.sourceforge.com>Fri, 12 Mar 2010 10:00:22 +0000cdk15484annulenRussian 306http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15484jchempaint/trunk/po/ru.po1268388032Python Subversion client for CIA1.20from sfp-svn-5.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Thu, 11 Mar 2010 11:56:49 +0000noreply@sourceforge.net<E1Nph0T-0006Hm-NQ@sfp-svn-5.v30.ch3.sourceforge.com>Thu, 11 Mar 2010 11:56:49 +0000cdk15483shk3The testMenuCut test failed and I think it just tested for wrong values 32http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15483jchempaint/trunk/src/test/org/openscience/jchempaint/JCPEditorAppletMenuTest.java1268308620Python Subversion client for CIA1.20from sfp-svn-5.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Thu, 11 Mar 2010 11:50:42 +0000noreply@sourceforge.net<E1NpguY-00068B-Pf@sfp-svn-5.v30.ch3.sourceforge.com>Thu, 11 Mar 2010 11:50:42 +0000cdk15482shk3A few changes for the layout of reactions 61http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15482jchempaint/trunk/src/main/org/openscience/jchempaint/controller/ControllerHub.javajchempaint/trunk/src/main/org/openscience/jchempaint/renderer/Renderer.java1268308255Python Subversion client for CIA1.20from sfp-svn-2.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Thu, 11 Mar 2010 08:45:14 +0000noreply@sourceforge.net<E1Npe14-0000c2-1L@sfp-svn-2.v30.ch3.sourceforge.com>Thu, 11 Mar 2010 08:45:14 +0000cdk15481egonwApplied Achim's fixes 42http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15481cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268297125Python Subversion client for CIA1.20from sfp-svn-2.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Thu, 11 Mar 2010 08:39:08 +0000noreply@sourceforge.net<E1NpdvA-0000W8-6W@sfp-svn-2.v30.ch3.sourceforge.com>Thu, 11 Mar 2010 08:39:08 +0000cdk15480egonwUpdated table order for Methods -> Implementation reordering, so that the are numbered correctly again (first 1 then 2) 66http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15480cdk-taverna-paper/trunk/cdk-taverna/bmc_article.pdfcdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268296758Python Subversion client for CIA1.20from sfp-svn-2.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Thu, 11 Mar 2010 08:37:38 +0000noreply@sourceforge.net<E1Npdti-0000U4-Ez@sfp-svn-2.v30.ch3.sourceforge.com>Thu, 11 Mar 2010 08:37:38 +0000cdk15479egonwLabels must be directly after the caption to show up properly 42http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15479cdk-taverna-paper/trunk/cdk-taverna/bmc_article.pdfcdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268296668Python Subversion client for CIA1.20from sfp-svn-6.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Wed, 10 Mar 2010 21:36:14 +0000noreply@sourceforge.net<E1NpTZe-0006t0-V3@sfp-svn-6.v30.ch3.sourceforge.com>Wed, 10 Mar 2010 21:36:14 +0000cdk15478egonwAdded current PDFs 21http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15478cdk-taverna-paper/trunk/cdk-taverna/bmc_article.pdfcdk-taverna-paper/trunk/cdk-taverna/bmc_article_withImages.pdf1268256985Python Subversion client for CIA1.20from sfp-svn-6.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Wed, 10 Mar 2010 21:35:21 +0000noreply@sourceforge.net<E1NpTYn-0006rX-Rl@sfp-svn-6.v30.ch3.sourceforge.com>Wed, 10 Mar 2010 21:35:21 +0000cdk15477egonwRemoved images once more, as needed for upload to BMC 17http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15477cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268256932Python Subversion client for CIA1.20from sfp-svn-6.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Wed, 10 Mar 2010 21:30:53 +0000noreply@sourceforge.net<E1NpTUT-0006lk-I9@sfp-svn-6.v30.ch3.sourceforge.com>Wed, 10 Mar 2010 21:30:53 +0000cdk15476egonwThe methods section now being a prominent part of the text, I have rewritten it to guide the user a bit more on the why's of the implementation, reordering a bit the content of the methods section. 55http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15476cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268256664Python Subversion client for CIA1.20from sfp-svn-6.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Wed, 10 Mar 2010 21:14:18 +0000noreply@sourceforge.net<E1NpTEQ-0006PC-07@sfp-svn-6.v30.ch3.sourceforge.com>Wed, 10 Mar 2010 21:14:18 +0000cdk15475egonwMoved section Methods as is to Implementation 149http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15475cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268255671Python Subversion client for CIA1.20from sfp-svn-6.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Wed, 10 Mar 2010 21:04:38 +0000noreply@sourceforge.net<E1NpT54-00069e-6Y@sfp-svn-6.v30.ch3.sourceforge.com>Wed, 10 Mar 2010 21:04:38 +0000cdk15474egonwApplied final linguistic remarks by Achim (some slightly adapted) 60http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15474cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268255089Python Subversion client for CIA1.20from sfp-svn-6.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Wed, 10 Mar 2010 20:53:46 +0000noreply@sourceforge.net<E1NpSuY-0005rM-3y@sfp-svn-6.v30.ch3.sourceforge.com>Wed, 10 Mar 2010 20:53:46 +0000cdk15473egonwTwo larger suggested rewrites 40http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15473cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268254436Python Subversion client for CIA1.20from sfp-svn-6.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Wed, 10 Mar 2010 20:38:13 +0000noreply@sourceforge.net<E1NpSfV-0005Tj-EI@sfp-svn-6.v30.ch3.sourceforge.com>Wed, 10 Mar 2010 20:38:13 +0000cdk15472egonwApplied more spelling fixes by Achim 86http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15472cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268253503Python Subversion client for CIA1.20from sfp-svn-3.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Wed, 10 Mar 2010 20:10:53 +0000noreply@sourceforge.net<E1NpSF3-0008ST-DL@sfp-svn-3.v30.ch3.sourceforge.com>Wed, 10 Mar 2010 20:10:53 +0000cdk15471egonwReplaced image with one that actually matches workflow 555 and updated the Figure caption 109http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15471cdk-taverna-paper/trunk/cdk-taverna/bmc_article.texcdk-taverna-paper/trunk/cdk-taverna/pics/databaseSubstructureSearch.pngcdk-taverna-paper/trunk/cdk-taverna/pics_src/substructure_search_on_database.svg.xml1268251863Python Subversion client for CIA1.20from sfp-svn-3.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Wed, 10 Mar 2010 19:54:30 +0000noreply@sourceforge.net<E1NpRzC-00089x-9V@sfp-svn-3.v30.ch3.sourceforge.com>Wed, 10 Mar 2010 19:54:30 +0000cdk15470egonwRemoved SQL statement as suggested 19http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15470cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268250882Python Subversion client for CIA1.20from sfp-svn-3.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Wed, 10 Mar 2010 19:53:01 +0000noreply@sourceforge.net<E1NpRxl-00088N-Ei@sfp-svn-3.v30.ch3.sourceforge.com>Wed, 10 Mar 2010 19:53:01 +0000cdk15469egonwThree more typo's fixed 34http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15469cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268250791Python Subversion client for CIA1.20from sfp-svn-3.v30.ch3.sourceforge.com (ch3.sourceforge.net [216.34.181.60])
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for cia@cia.vc; Wed, 10 Mar 2010 19:45:16 +0000noreply@sourceforge.net<E1NpRqG-0007vd-I8@sfp-svn-3.v30.ch3.sourceforge.com>Wed, 10 Mar 2010 19:45:16 +0000cdk15468egonwApplied Achim's first comment 20http://cdk.svn.sourceforge.net/cdk/?view=rev&rev=15468cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex1268250327github1http://www.github.comcdkmaster1267961654Egon Willighagendd08f5aAdded missing copyright statement and import - http://bit.ly/9duwUZhttp://github.com/egonw/cdk/commit/dd08f5a3f3c25ba0d9691b91cf61e8b6ae223e39 src/test/org/openscience/cdk/io/MDLWriterTest.java