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PyMVPA
Multivariate Pattern Analysis in Python
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PyMVPA is a Python module intended to ease pattern classification analyses of large datasets. In the neuroimaging contexts such analysis techniques are also known as decoding or MVPA analysis. PyMVPA provides high-level abstraction of typical processing steps and a number of implementations of some popular algorithms. While it is not limited to the neuroimaging domain, it is eminently suited for such datasets. PyMVPA is truly free software (in every respect) and additionally requires nothing but free-software to run.
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00:22 on Mar 22, 2010
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The last message was received 0.96 days ago at 01:24 on Mar 21, 2010
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01:24 yesterdaypymvpa
Commit by debian on yoh/master :: r151df8c pymvpa/mvpa/ (2 files in 2 dirs):

Merge remote branch 'alioth/yoh/master'

  • alioth/yoh/master: BF: moving scipy-dependent statement in gnbsearchlight BF+RF: apparently epsilon is tube_epsilon for sg.LibSVR + sg.svm.seed
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01:24 yesterdaypymvpa
Commit by debian on yoh/master :: rce6245b pymvpa/doc/ (2 files in 2 dirs):

Merge remote branch 'alioth/mh/master' into yoh/master

  • alioth/mh/master: DOC: Restructure paper listing. DOC: Note new users with Nature Neuroscience paper ;-)
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01:24 yesterdaypymvpa
Commit by michael.hanke on yoh/master :: ra80c10f pymvpa/doc/source/whoisusingit.rst:
DOC: Restructure paper listing.
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01:24 yesterdaypymvpa
Commit by michael.hanke on yoh/master :: rd8d109c pymvpa/ (8 files in 6 dirs):

Merge remote branch 'github/mh/master' into mh/master

  • github/mh/master: BF+DOC: Wrong link to tutorial. BF: actually fail (error exist status) whenever unittest-debug fails (uff) BF: access selected_ids from .ca BF: unittest-debug -- do not rely on MVPA_SEED or OK being in the tail -- just go to the end ;) BF: nr_class can be None, so just use %s in debug printout OPT+PL: more efficient loop while extracting info from /proc/pid/status BF: access ca.confusion instead of just .confusion DOC(BF): forgotten import to make snippet work DOC: upgrade year for Michael ;)
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01:24 yesterdaypymvpa
Commit by michael.hanke on yoh/master :: rdf58043 pymvpa/ (27 files in 11 dirs):

Merge remote branch 'alioth/yoh/master' into mh/master

  • alioth/yoh/master: DOC: Adding VS06 and SS01 references + unifying keywords somewhat DOC: minor fixes to reduce sphinx complaints etc DOC: updated link to mayavi2 DOC: Adding testing and tests to modref DOC: giving a pass (not complete) to devguide.rst: restructuring, removing, adding ENH: daily tests -- provide description of current position of the branch BF: attr -> permute_attr in a unittest (slipped through during RF) ENH: test storing/restoring of trained (non swigged or rpy2-ed) classifiers ENH+BF: tag swig-ed and rpy2-ed classifiers correspondingly (+untrain for LARS and GLMNET) BF: sweepargs -- do not stop upon first received SkipTest RF+NF: permute_targets -> permute_attr to permute values in arbitrary attribute BF: OFTC not OTFC ;) BF: actually setting shrinking parameter for sg.SVM ENH: seed shogun with mvpa._random_seed for consistent results ENH: more informative failure message for a unittest BF: numbers of SVs in libsvm bindings should be deduced differently for regressions placeholder for a unittest to assure absent segfaults (reported by Daniel Kimberg) Conflicts: doc/misc/references.bib
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01:24 yesterdaypymvpa
Commit by michael.hanke on yoh/master :: re7e37b2 pymvpa/doc/ (2 files in 2 dirs):
DOC: Note new users with Nature Neuroscience paper ;-)
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01:24 yesterdaypymvpa
Commit by debian :: r151df8c pymvpa/mvpa/ (2 files in 2 dirs):

Merge remote branch 'alioth/yoh/master'

  • alioth/yoh/master: BF: moving scipy-dependent statement in gnbsearchlight BF+RF: apparently epsilon is tube_epsilon for sg.LibSVR + sg.svm.seed
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01:24 yesterdaypymvpa
Commit by debian :: rce6245b pymvpa/doc/ (2 files in 2 dirs):

Merge remote branch 'alioth/mh/master' into yoh/master

  • alioth/mh/master: DOC: Restructure paper listing. DOC: Note new users with Nature Neuroscience paper ;-)
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01:24 yesterdaypymvpa
Commit by debian :: rbbe31f1 pymvpa/mvpa/measures/gnbsearchlight.py:
BF: moving scipy-dependent statement in gnbsearchlight
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01:24 yesterdaypymvpa
Commit by debian :: r9eca119 pymvpa/mvpa/clfs/sg/svm.py:
BF+RF: apparently epsilon is tube_epsilon for sg.LibSVR + sg.svm.seed
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01:24 yesterdaypymvpa
Commit by michael.hanke :: ra80c10f pymvpa/doc/source/whoisusingit.rst:
DOC: Restructure paper listing.
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01:24 yesterdaypymvpa
Commit by michael.hanke :: rd8d109c pymvpa/ (8 files in 6 dirs):

Merge remote branch 'github/mh/master' into mh/master

  • github/mh/master: BF+DOC: Wrong link to tutorial. BF: actually fail (error exist status) whenever unittest-debug fails (uff) BF: access selected_ids from .ca BF: unittest-debug -- do not rely on MVPA_SEED or OK being in the tail -- just go to the end ;) BF: nr_class can be None, so just use %s in debug printout OPT+PL: more efficient loop while extracting info from /proc/pid/status BF: access ca.confusion instead of just .confusion DOC(BF): forgotten import to make snippet work DOC: upgrade year for Michael ;)
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01:24 yesterdaypymvpa
Commit by michael.hanke :: rdf58043 pymvpa/ (27 files in 11 dirs):

Merge remote branch 'alioth/yoh/master' into mh/master

  • alioth/yoh/master: DOC: Adding VS06 and SS01 references + unifying keywords somewhat DOC: minor fixes to reduce sphinx complaints etc DOC: updated link to mayavi2 DOC: Adding testing and tests to modref DOC: giving a pass (not complete) to devguide.rst: restructuring, removing, adding ENH: daily tests -- provide description of current position of the branch BF: attr -> permute_attr in a unittest (slipped through during RF) ENH: test storing/restoring of trained (non swigged or rpy2-ed) classifiers ENH+BF: tag swig-ed and rpy2-ed classifiers correspondingly (+untrain for LARS and GLMNET) BF: sweepargs -- do not stop upon first received SkipTest RF+NF: permute_targets -> permute_attr to permute values in arbitrary attribute BF: OFTC not OTFC ;) BF: actually setting shrinking parameter for sg.SVM ENH: seed shogun with mvpa._random_seed for consistent results ENH: more informative failure message for a unittest BF: numbers of SVs in libsvm bindings should be deduced differently for regressions placeholder for a unittest to assure absent segfaults (reported by Daniel Kimberg) Conflicts: doc/misc/references.bib
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01:24 yesterdaypymvpa
Commit by michael.hanke :: re7e37b2 pymvpa/doc/ (2 files in 2 dirs):
DOC: Note new users with Nature Neuroscience paper ;-)
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01:24 yesterdaypymvpa
Commit by debian :: r1d1556f pymvpa/ (11 files in 8 dirs):

Merge commit 'alioth/yoh/master' into yoh/master

  • commit 'alioth/yoh/master': NF: mvpa.support.ipython + ipy_pymvpa_completer BF+DOC: Wrong link to tutorial. BF: actually fail (error exist status) whenever unittest-debug fails (uff) BF: access selected_ids from .ca BF: unittest-debug -- do not rely on MVPA_SEED or OK being in the tail -- just go to the end ;) BF: nr_class can be None, so just use %s in debug printout OPT+PL: more efficient loop while extracting info from /proc/pid/status BF: access ca.confusion instead of just .confusion DOC(BF): forgotten import to make snippet work
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01:24 yesterdaypymvpa
Commit by debian :: rf3e2ba4 pymvpa/mvpa/clfs/sg/svm.py:
BF: workaround for shogun -- epsilon in constructor for regressions has no effect
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01:24 yesterdaypymvpa
Commit by debian :: rc534630 pymvpa/ (4 files in 3 dirs):
 NF: mvpa.support.ipython + ipy_pymvpa_completer

that is where to collect all additions for making IPython experience
most pleasant ;)
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01:24 yesterdaypymvpa
Commit by debian :: ref700df pymvpa/mvpa/kernels/sg.py:
BF: import debug for kernels.sg
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01:24 yesterdaypymvpa
Commit by debian :: r63743d1 pymvpa/mvpa/misc/errorfx.py:
ENH: complement CorrErrorFx with just CorrFx
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01:24 yesterdaypymvpa
Commit by debian :: r0711b0a pymvpa/mvpa/ (atlases/fsl.py tests/test_atlases.py):
ENH: fslatlas.get_maps -- accepts now 'key_attr' defining on what to use for keys
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