date | project | content | link |
|---|
| 14:01 on Aug 18 | relax | Commit by bugman :: r11533 /1.3/specific_fns/frame_order.py: The negative cones and z-axes are now not created for the pseudo-ellipses in frame_order.cone_pdb(). | # |
| 14:00 on Aug 18 | relax | Commit by bugman :: r11532 /1.3/generic_fns/pymol_control.py: Added some transparency to the cone in pymol.cone_pdb(). | # |
| 06:45 on Aug 18 | relax | Commit by bugman :: r11531 /1.3/specific_fns/frame_order.py: Fix for the frame_order.cone_pdb() user function - the cone is already in the PDB frame, no rotation required. | # |
| 06:38 on Aug 18 | relax | Commit by bugman :: r11530 /1.3/generic_fns/pymol_control.py: Fix for the average domain rotation in pymol.cone_pdb().
The pymol angle should be degrees, and the rotation is passive not active. | # |
| 16:40 on Aug 17 | relax | Commit by bugman :: r11529 /1.3/generic_fns/pymol_control.py: pymol.cone_pdb() is now rotating the moving domain to the average position for the frame order theory. | # |
| 15:57 on Aug 17 | relax | Commit by bugman :: r11528 /1.3/specific_fns/frame_order.py: Modified frame_order.domain_to_pdb() to remove the file ending if given.
This allows the structure to be rotated in pymol. | # |
| 15:45 on Aug 17 | relax | Commit by bugman :: r11527 /1.3/ (2 files in 2 dirs): Created the frame_order.domain_to_pdb() user function to associated PDB files with domains.
This will be used to rotated the moving domain to the average position within pymol. | # |
| 15:22 on Aug 17 | relax | Commit by bugman :: r11526 /1.3/specific_fns/frame_order.py: Rewrote frame_order.cone_pdb() to handle all of the frame order models. | # |
| 15:22 on Aug 17 | relax | Commit by bugman :: r11525 /1.3/generic_fns/structure/geometric.py: The start_res arg to create_cone_pdb() is now actually the number of the starting residue of the cone. | # |
| 14:56 on Aug 17 | relax | Commit by bugman :: r11524 /1.3/generic_fns/pymol_control.py: Modified the pymol.cone_pdb() user function to handle x, y, and z-axes. | # |
| 14:55 on Aug 17 | relax | Commit by bugman :: r11523 /1.3/generic_fns/structure/geometric.py: Modified create_cone_pdb() to accept a pre-made structural object and to create a file only when asked. | # |
| 14:18 on Aug 17 | relax | Commit by bugman :: r11522 /1.3/generic_fns/structure/cones.py: Switched the names of the Pseudo_elliptic and Pseudo_elliptic2 classes. | # |
| 12:02 on Aug 17 | relax | Commit by bugman :: r11521 /1.3/prompt/frame_order.py: Bug fix for the frame_order.pivot() user function - it is now functional. | # |
| 20:11 on Aug 16 | relax | Commit by bugman :: r11520 /1.3/data/__init__.py: The base contents of the relax data store are no longer saved with a call to results.write(). | # |
| 16:26 on Aug 16 | relax | Commit by bugman :: r11519 /1.3/specific_fns/frame_order.py: More fixes for the torsionless isotropic cone frame order model. | # |
| 16:21 on Aug 16 | relax | Commit by bugman :: r11518 /1.3/specific_fns/frame_order.py: Bug fix for the unpacking of results from the torsionless isotropic cone frame order model.
The optimised cone angle was being set to the order parameter in cone_s1. | # |
| 13:34 on Aug 16 | relax | Commit by bugman :: r11517 /1.3/generic_fns/pcs.py: Fix for the pcs.back_calc() user function for when multiple structures are loaded. | # |
| 14:07 on Aug 15 | relax | Commit by bugman :: r11516 /1.3/generic_fns/rdc.py: Fix for rdc.read() when neg_g_corr is set to True and the RDC list contains entries with None. | # |
| 11:19 on Aug 15 | relax | Commit by bugman :: r11515 /1.3/prompt/rdc.py: The negative gyromagnetic ratio correction flag neg_g_corr is now available in the rdc.read() user fn. | # |
| 11:12 on Aug 15 | relax | Commit by bugman :: r11514 /1.3/generic_fns/structure/internal.py: Better identification of the molecule end in the internal PDB reader.
HETATMs after a TER are now considered part of the same molecule, as they should be. | # |
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